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squidpy
Index
Index
A
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C
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D
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E
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F
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G
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I
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L
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M
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N
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P
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R
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S
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U
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V
A
adata (squidpy.pl.Interactive property)
add_img() (squidpy.im.ImageContainer method)
apply() (squidpy.im.ImageContainer method)
C
calculate_image_features() (in module squidpy.im)
centrality_scores() (in module squidpy.gr)
(in module squidpy.pl)
close() (squidpy.pl.Interactive method)
co_occurrence() (in module squidpy.gr)
(in module squidpy.pl)
compute() (squidpy.im.ImageContainer method)
concat() (squidpy.im.ImageContainer class method)
copy() (squidpy.im.ImageContainer method)
crop_center() (squidpy.im.ImageContainer method)
crop_corner() (squidpy.im.ImageContainer method)
D
data (squidpy.im.ImageContainer property)
E
extract() (in module squidpy.pl)
F
features_custom() (squidpy.im.ImageContainer method)
features_histogram() (squidpy.im.ImageContainer method)
features_segmentation() (squidpy.im.ImageContainer method)
features_summary() (squidpy.im.ImageContainer method)
features_texture() (squidpy.im.ImageContainer method)
four_i() (in module squidpy.datasets)
from_adata() (squidpy.im.ImageContainer class method)
G
generate_equal_crops() (squidpy.im.ImageContainer method)
generate_spot_crops() (squidpy.im.ImageContainer method)
I
ImageContainer (class in squidpy.im)
imc() (in module squidpy.datasets)
interaction_matrix() (in module squidpy.gr)
(in module squidpy.pl)
Interactive (class in squidpy.pl)
interactive() (squidpy.im.ImageContainer method)
L
library_ids (squidpy.im.ImageContainer property)
ligrec() (in module squidpy.gr)
(in module squidpy.pl)
load() (squidpy.im.ImageContainer class method)
M
merfish() (in module squidpy.datasets)
mibitof() (in module squidpy.datasets)
module
squidpy.datasets
squidpy.gr
squidpy.im
squidpy.pl
squidpy.read
squidpy.tl
N
nanostring() (in module squidpy.read)
nhood_enrichment() (in module squidpy.gr)
(in module squidpy.pl)
P
process() (in module squidpy.im)
R
rename() (squidpy.im.ImageContainer method)
ripley() (in module squidpy.gr)
(in module squidpy.pl)
S
save() (squidpy.im.ImageContainer method)
sc_mouse_cortex() (in module squidpy.datasets)
screenshot() (squidpy.pl.Interactive method)
segment() (in module squidpy.im)
(squidpy.im.SegmentationCustom method)
(squidpy.im.SegmentationWatershed method)
SegmentationCustom (class in squidpy.im)
SegmentationWatershed (class in squidpy.im)
sepal() (in module squidpy.gr)
seqfish() (in module squidpy.datasets)
shape (squidpy.im.ImageContainer property)
show() (squidpy.im.ImageContainer method)
(squidpy.pl.Interactive method)
slideseqv2() (in module squidpy.datasets)
spatial_autocorr() (in module squidpy.gr)
spatial_neighbors() (in module squidpy.gr)
spatial_scatter() (in module squidpy.pl)
spatial_segment() (in module squidpy.pl)
squidpy.datasets
module
squidpy.gr
module
squidpy.im
module
squidpy.pl
module
squidpy.read
module
squidpy.tl
module
subset() (squidpy.im.ImageContainer method)
U
uncrop() (squidpy.im.ImageContainer class method)
V
var_by_distance() (in module squidpy.pl)
(in module squidpy.tl)
visium() (in module squidpy.datasets)
(in module squidpy.read)
visium_fluo_adata() (in module squidpy.datasets)
visium_fluo_adata_crop() (in module squidpy.datasets)
visium_fluo_image_crop() (in module squidpy.datasets)
visium_hne_adata() (in module squidpy.datasets)
visium_hne_adata_crop() (in module squidpy.datasets)
visium_hne_image() (in module squidpy.datasets)
visium_hne_image_crop() (in module squidpy.datasets)
vizgen() (in module squidpy.read)
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