Squidpy 1.1.0 (2021-07-01)
Bugfixes
Fix
squidpy.im.ImageContainer
to work with different scaled. #320 @hspitzerFix handling of
anndata.AnnData.obsm
insquidpy.im.ImageContainer.interactive()
. #335 @michalk8Fix Z-dimension in
squidpy.im.ImageContainer.interactive()
. #351 @hspitzerFix plotting bug in
squidpy.pl.ripley()
. #352 @giovpFix handling of NaNs in
squidpy.gr.ligrec()
. #362 @michalk8
Features
Add many new tutorials and examples.
Add
squidpy.gr.sepal()
[Anderson and Lundeberg, 2021] #313 @giovpReplace
squidpy.gr.moran
withsquidpy.gr.spatial_autocorr()
, which implements both Moran’s I and Geary’s C. #317 @giovpAdd option to compute graph from Delaunay triangulation in
squidpy.gr.spatial_neighbors()
. #322 @MxMstrmnAdd lazy computation using
dask
forsquidpy.im
. #324 @michalk8Allow Z-dimension shared across all layers in
squidpy.im.ImageContainer
. #329 @hspitzerReplace
squidpy.gr.ripley_k
withsquidpy.gr.ripley()
. #331 @giovpGeneralize graph building in
squidpy.gr.spatial_neighbors()
. #340 @KoncopdAdd 3 new example datasets: -
squidpy.datasets.merfish()
-squidpy.datasets.mibitof()
-squidpy.datasets.slideseqv2()
#348 @giovpEnable additional layer specification in
squidpy.im.calculate_image_features()
. #354 @hspitzerExpose
canvas_only
insquidpy.pl.Interactive.screenshot()
. #363 @giovpVarious minor improvements to the documentation. #356 @michalk8