Squidpy 1.1.0 (2021-07-01)

Bugfixes

• Fix squidpy.im.ImageContainer to work with different scaled. #320 @hspitzer

• Fix handling of :attr:anndata.AnnData.obsm in squidpy.im.ImageContainer.interactive. #335 @michalk8

• Fix Z-dimension in squidpy.im.ImageContainer.interactive. #351 @hspitzer

• Fix plotting bug in squidpy.pl.ripley(). #352 @giovp

• Fix handling of NaNs in squidpy.gr.ligrec(). #362 @michalk8

Features

• Add many new tutorials and examples.

• Add squidpy.gr.sepal() :cite:andersson2021 #313 @giovp

• Replace squidpy.gr.moran with squidpy.gr.spatial_autocorr(), which implements both Moran’s I and Geary’s C. #317 @giovp

• Add option to compute graph from Delaunay triangulation in squidpy.gr.spatial_neighbors(). #322 @MxMstrmn

• Add lazy computation using :doc:dask:index for squidpy.im. #324 @michalk8

• Allow Z-dimension shared across all layers in squidpy.im.ImageContainer. #329 @hspitzer

• Replace squidpy.gr.ripley_k with squidpy.gr.ripley(). #331 @giovp

• Generalize graph building in squidpy.gr.spatial_neighbors(). #340 @Koncopd

• Add 3 new example datasets:

  • squidpy.datasets.merfish()

  • squidpy.datasets.mibitof()

  • squidpy.datasets.slideseqv2() #348 @giovp

• Enable additional layer specification in squidpy.im.calculate_image_features(). #354 @hspitzer

• Expose canvas_only in squidpy.pl.Interactive.screenshot. #363 @giovp

• Various minor improvements to the documentation. #356 @michalk8

  #358 @michalk8

  #359 @michalk8