Squidpy 1.2.3 (2022-10-18)

Bugfixes

• Fix plotting non-unique categorical colors in squidpy.pl.spatial_scatter(). @michalk8 #561

• Fix squidpy.read.vizgen(). @giovp #568

• Convert ListedColorMap to Cycler object. @michalk8 #580

• Accomodate latest changes made in spaceranger 2.0 @stephenwilliams22 #583

• Fix ligrec from pandas update. @giovp #609

Miscellaneous

• Better error message for handling palette in squidpy.pl.spatial_scatter(). @giovp #562

• Update pre-commits and fix CI. @giovp #587

• Separate linting job on the CI instead as a step. Fix documentation. @michalk8 #596

• Update requirements in docs. @michalk8 #601

• Change docs theme with Furo, update release note. @giovp #512

• Fix release notes and misc. @giovp #617

Documentation

• Added a squidpy tutorial for Xenium data. @LLehner #102

• New tutorial for 10x Genomics Xenium data. @LLehner #615

• Added tutorial notebook for vizgen mouse liver data. @giovp #106