squidpy.gr.neighbors.GridBuilder
- class squidpy.gr.neighbors.GridBuilder(n_neighs=6, n_rings=1, delaunay=False, transform=None, set_diag=False)[source]
Build a grid-based spatial graph.
Assumes observations lie on an approximately regular lattice (e.g., Visium). When
delaunay=True, Delaunay triangulation is used only to derive the base connectivity; the distance matrix still encodes grid/ring distances, not Euclidean lengths.See
spatial_neighbors_grid()for the user-facing API orspatial_neighbors_from_builder()for direct builder usage.Methods
build(coords)build_graph(coords)Construct raw adjacency and distance matrices.
combine(mats, ixs)Combine per-library results into a single graph.
Return post-build processing steps for
(adj, dst).Parameters stored in
anndata.AnnData.unsafter graph construction.