Squidpy - Spatial Single Cell Analysis in Python¶
Squidpy is a tool for the analysis and visualization of spatial molecular data. It builds on top of scanpy and anndata, from which it inherits modularity and scalability. It provides analysis tools that leverages the spatial coordinates of the data, as well as tissue images if available.
Please see our preprint on bioRxiv to learn more.
This release includes:
Add many new tutorials and examples
Add 3 new example datasets PR 348: