Installation
Squidpy requires Python version >= 3.8 to run.
PyPI
Install Squidpy by running:
pip install squidpy
Alternatively, to include all dependencies, such as the interactive image viewer napari
, run:
pip install 'squidpy[interactive]'
Conda
Install Squidpy via Conda as:
conda install -c conda-forge squidpy
Development version
To install Squidpy from GitHub, run:
pip install git+https://github.com/scverse/squidpy@main