Installation

Squidpy requires Python version >= 3.8 to run.

PyPI

Install Squidpy by running:

pip install squidpy

Alternatively, to include all dependencies, such as the interactive image viewer napari, run:

pip install 'squidpy[interactive]'

Conda

Install Squidpy via Conda as:

conda install -c conda-forge squidpy

Development version

To install Squidpy from GitHub, run:

pip install git+https://github.com/scverse/squidpy@main