squidpy.im.SegmentationCustom.segment

SegmentationCustom.segment(img, **kwargs)

Segment an image.

Parameters
Return type

Union[ndarray[Any, dtype[Any]], ImageContainer]

Returns

Segmentation mask for the high-resolution image of shape (height, width, z, 1).

Raises
  • ValueError – If the number of dimensions is neither 2 nor 3.

  • NotImplementedError – If trying to segment a type for which the segmentation has not been registered.