squidpy.im.ImageContainer.from_adata

classmethod ImageContainer.from_adata(adata, img_key=None, library_id=None, spatial_key='spatial', **kwargs)

Load an image from anndata object.

Parameters:

• adata (AnnData) – Annotated data object.

• img_key (Optional[str]) – Key in anndata.AnnData.uns ['{spatial_key}']['{library_id}']['images']. If None, the first key found is used.

• library_id (Union[str, Sequence[str], None]) – Key in anndata.AnnData.uns ['{spatial_key}'] specifying which library to access.

• spatial_key (str) – Key in anndata.AnnData.uns where spatial metadata is stored.

• kwargs (Any) – Keyword arguments for squidpy.im.ImageContainer.

Return type:

ImageContainer

Returns:

: The image container.