squidpy.experimental.im.MacenkoParams

class squidpy.experimental.im.MacenkoParams(alpha=1.0, beta=0.15)[source]

Tuning knobs for Macenko stain-matrix fitting.

Methods

Attributes

`alpha`	Angular percentile (deg) for the two stain directions; the extremes are taken at `alpha` / `100 - alpha`.
`beta`	Mean-absorbance cutoff selecting tissue pixels (optical-density space).